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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
UCEC cis rs10935120 1 rs9289471 chr3:134230811 ANAPC13 chr3:134196547-134204865:- 0.39 4.46 1.6E-5 Height
UCEC cis rs10935120 1 rs9289475 chr3:134236459 ANAPC13 chr3:134196547-134204865:- 0.4 4.63 7.91E-6 Height
UCEC cis rs10935120 1 rs9289476 chr3:134237103 ANAPC13 chr3:134196547-134204865:- 0.38 4.37 2.26E-5 Height
UCEC cis rs10935120 1 rs9289478 chr3:134268619 ANAPC13 chr3:134196547-134204865:- 0.38 4.37 2.26E-5 Height
UCEC cis rs9296404 1 rs9296404 chr6:42925803 GNMT chr6:42928500-42931617:+ -0.47 -5.19 6.61E-7 Plasma homocysteine levels (post-methionine load test)
UCEC cis rs9296404 1 rs9296404 chr6:42925803 PEX6 chr6:42931613-42946981:- 0.45 5.16 7.6E-7 Plasma homocysteine levels (post-methionine load test)
UCEC cis rs9473555 1 rs9296616 chr6:49414235 MUT chr6:49398994-49431031:- 0.41 6.9 1.29E-10 Folate pathway vitamin levels
UCEC cis rs9473555 1 rs9296617 chr6:49428360 MUT chr6:49398994-49431031:- 0.35 5.93 1.99E-8 Folate pathway vitamin levels
UCEC cis rs9309473 1 rs9309473 chr2:73743982 ALMS1P chr2:73872046-73912692:+ 0.47 5.54 1.32E-7 Metabolite levels
UCEC cis rs9815354 1 rs9311288 chr3:41804581 ULK4 chr3:41288091-42003660:- 0.53 6.38 2.03E-9 Diastolic blood pressure
UCEC cis rs10935120 1 rs934093 chr3:134195885 ANAPC13 chr3:134196547-134204865:- 0.4 4.51 1.3E-5 Height
UCEC cis rs9815354 1 rs939558 chr3:41976040 ULK4 chr3:41288091-42003660:- -0.49 -5.86 2.84E-8 Diastolic blood pressure
UCEC cis rs2143950 1 rs941653 chr14:35592538 PPP2R3C chr14:35554679-35591679:- 0.49 4.43 1.76E-5 Atopic dermatitis
UCEC cis rs7528684 1 rs945635 chr1:157670290 FCRL3 chr1:157646278-157670775:- 0.38 6.1 8.58E-9 Type 1 diabetes autoantibodies
UCEC cis rs9473555 1 rs9463473 chr6:49380121 MUT chr6:49398994-49431031:- 0.35 5.86 2.72E-8 Folate pathway vitamin levels